graphid.core package

Submodules

• graphid.core.__main__ module
• graphid.core._rhomb_dist module
  • RhombicuboctahedronDistanceDemo()
• graphid.core.annot_inference module
  • _rectify_decision()
  • Consistency
    • Consistency.is_consistent()
    • Consistency.positive_components()
    • Consistency.inconsistent_components()
    • Consistency.consistent_components()
  • Feedback
    • Feedback._check_edge()
    • Feedback.add_feedback_from()
    • Feedback.edge_decision()
    • Feedback.edge_decision_from()
    • Feedback.add_node_feedback()
    • Feedback.add_feedback()
    • Feedback._print_debug_ccs()
    • Feedback.feedback_keys
    • Feedback.feedback_data_keys
    • Feedback.apply_feedback_edges()
    • Feedback._rectify_feedback()
    • Feedback._rectify_feedback_item()
    • Feedback.all_feedback_items()
    • Feedback.all_feedback()
    • Feedback.clear_feedback()
    • Feedback.clear_edges()
    • Feedback.reset()
    • Feedback.reset_name_labels()
    • Feedback.clear_name_labels()
  • NameRelabel
    • NameRelabel.node_label()
    • NameRelabel.node_labels()
    • NameRelabel._next_nid()
    • NameRelabel._rectify_names()
    • NameRelabel._rectified_relabel()
    • NameRelabel.relabel_using_reviews()
  • MiscHelpers
    • MiscHelpers._rectify_nids()
    • MiscHelpers.remove_aids()
    • MiscHelpers.add_aids()
    • MiscHelpers.update_node_attributes()
    • MiscHelpers.initialize_graph()
    • MiscHelpers.print()
    • MiscHelpers.latest_logs()
    • MiscHelpers.dump_logs()
  • AltConstructors
    • AltConstructors._graph_cls
    • AltConstructors.from_pairs()
    • AltConstructors.from_netx()
    • AltConstructors.status()
  • AnnotInference
    • AnnotInference.subparams()
    • AnnotInference.copy()
    • AnnotInference.subgraph()
    • AnnotInference.set_config()
• graphid.core.mixin_callbacks module
  • InfrCallbacks
    • InfrCallbacks.set_ranker()
    • InfrCallbacks.set_verifier()
    • InfrCallbacks.refresh_candidate_edges()
  • InfrCandidates
    • InfrCandidates.add_candidate_edges()
    • InfrCandidates.ensure_task_probs()
    • InfrCandidates.ensure_priority_scores()
• graphid.core.mixin_dynamic module
  • DynamicUpdate
    • DynamicUpdate.ensure_edges_from()
    • DynamicUpdate._add_review_edges_from()
    • DynamicUpdate._add_review_edge()
    • DynamicUpdate._get_current_decision()
    • DynamicUpdate.on_between()
    • DynamicUpdate.on_within()
    • DynamicUpdate._update_neg_metagraph()
    • DynamicUpdate._positive_decision()
    • DynamicUpdate._negative_decision()
    • DynamicUpdate._uninferable_decision()
  • Recovery
    • Recovery.is_recovering()
    • Recovery._purge_error_edges()
    • Recovery._set_error_edges()
    • Recovery.maybe_error_edges()
    • Recovery._new_inconsistency()
    • Recovery._check_inconsistency()
    • Recovery._mincut_edge_weights()
    • Recovery.hypothesis_errors()
  • NonDynamicUpdate
    • NonDynamicUpdate.apply_nondynamic_update()
    • NonDynamicUpdate.collapsed_meta_edges()
    • NonDynamicUpdate.categorize_edges()
• graphid.core.mixin_helpers module
  • AttrAccess
    • AttrAccess.gen_node_attrs()
    • AttrAccess.gen_edge_attrs()
    • AttrAccess.gen_node_values()
    • AttrAccess.gen_edge_values()
    • AttrAccess.get_node_attrs()
    • AttrAccess.get_edge_attrs()
    • AttrAccess._get_edges_where()
    • AttrAccess.get_edges_where_eq()
    • AttrAccess.get_edges_where_ne()
    • AttrAccess.set_node_attrs()
    • AttrAccess.set_edge_attrs()
    • AttrAccess.get_edge_attr()
    • AttrAccess.set_edge_attr()
    • AttrAccess.get_annot_attrs()
    • AttrAccess.edges()
    • AttrAccess.has_edge()
    • AttrAccess.get_edge_data()
    • AttrAccess.get_nonvisual_edge_data()
    • AttrAccess.get_edge_dataframe()
    • AttrAccess.get_edge_df_text()
  • Convenience
    • Convenience.e_()
    • Convenience.pos_graph
    • Convenience.neg_graph
    • Convenience.incomp_graph
    • Convenience.unreviewed_graph
    • Convenience.unknown_graph
    • Convenience.print_graph_info()
    • Convenience.print_graph_connections()
    • Convenience.print_within_connection_info()
    • Convenience.pair_connection_info()
    • Convenience.node_tag_hist()
    • Convenience.edge_tag_hist()
    • Convenience.match_state_df()
  • DummyEdges
    • DummyEdges.ensure_mst()
    • DummyEdges.ensure_cliques()
    • DummyEdges.ensure_full()
    • DummyEdges.find_clique_edges()
    • DummyEdges.find_mst_edges()
    • DummyEdges.find_connecting_edges()
• graphid.core.mixin_invariants module
  • AssertInvariants
    • AssertInvariants.assert_edge()
    • AssertInvariants.assert_invariants()
    • AssertInvariants.assert_neg_metagraph()
    • AssertInvariants.assert_union_invariant()
    • AssertInvariants.assert_disjoint_invariant()
    • AssertInvariants.assert_consistency_invariant()
    • AssertInvariants.assert_recovery_invariant()
• graphid.core.mixin_loops module
  • InfrLoops
    • InfrLoops.main_gen()
    • InfrLoops.hardcase_review_gen()
    • InfrLoops.ranked_list_gen()
    • InfrLoops.incon_recovery_gen()
    • InfrLoops.pos_redun_gen()
    • InfrLoops.neg_redun_gen()
    • InfrLoops._inner_priority_gen()
    • InfrLoops.init_refresh()
    • InfrLoops.start_id_review()
    • InfrLoops.main_loop()
  • InfrReviewers
    • InfrReviewers.try_auto_review()
    • InfrReviewers.request_oracle_review()
    • InfrReviewers._make_review_tuple()
    • InfrReviewers.emit_manual_review()
    • InfrReviewers.skip()
    • InfrReviewers.accept()
    • InfrReviewers.continue_review()
• graphid.core.mixin_priority module
  • Priority
    • Priority.remaining_reviews()
    • Priority._pop()
    • Priority._push()
    • Priority._peek_many()
    • Priority._remove_edge_priority()
    • Priority._reinstate_edge_priority()
    • Priority._increase_priority()
    • Priority.remove_internal_priority()
    • Priority.reinstate_internal_priority()
    • Priority.prioritize()
    • Priority.push()
    • Priority.pop()
    • Priority.peek()
    • Priority.peek_many()
    • Priority.confidently_connected()
    • Priority.confidently_separated()
    • Priority.generate_reviews()
    • Priority._generate_reviews()
• graphid.core.mixin_redundancy module
  • _RedundancyComputers
    • _RedundancyComputers.is_pos_redundant()
    • _RedundancyComputers.is_neg_redundant()
    • _RedundancyComputers.find_neg_nids_to()
    • _RedundancyComputers.find_neg_nid_freq_to()
    • _RedundancyComputers.find_neg_redun_nids_to()
    • _RedundancyComputers.find_pos_redundant_pccs()
    • _RedundancyComputers.find_non_pos_redundant_pccs()
    • _RedundancyComputers.find_non_neg_redun_pccs()
    • _RedundancyComputers.find_pos_redun_nids()
    • _RedundancyComputers.find_neg_redun_nids()
  • _RedundancyAugmentation
    • _RedundancyAugmentation.find_neg_augment_edges()
    • _RedundancyAugmentation.find_pos_augment_edges()
    • _RedundancyAugmentation.find_pos_redun_candidate_edges()
    • _RedundancyAugmentation.find_neg_redun_candidate_edges()
  • Redundancy
    • Redundancy.is_flagged_as_redun()
    • Redundancy.filter_edges_flagged_as_redun()
    • Redundancy.update_extern_neg_redun()
    • Redundancy.update_neg_redun_to()
    • Redundancy.update_pos_redun()
    • Redundancy._set_pos_redun_flag()
    • Redundancy._set_neg_redun_flags()
    • Redundancy._purge_redun_flags()
• graphid.core.mixin_simulation module
  • SimulationHelpers
    • SimulationHelpers.init_simulation()
    • SimulationHelpers.init_test_mode()
    • SimulationHelpers.measure_error_edges()
    • SimulationHelpers.measure_metrics()
    • SimulationHelpers._print_previous_loop_statistics()
    • SimulationHelpers._dynamic_test_callback()
  • UserOracle
    • UserOracle.review()
• graphid.core.mixin_viz module
  • GraphVisualization
    • GraphVisualization._get_truth_colors()
    • GraphVisualization._error_color
    • GraphVisualization._get_cmap()
    • GraphVisualization.initialize_visual_node_attrs()
    • GraphVisualization.update_node_image_config()
    • GraphVisualization.update_node_image_attribute()
    • GraphVisualization.get_colored_edge_weights()
    • GraphVisualization.get_colored_weights()
    • GraphVisualization.visual_edge_attrs
    • GraphVisualization.visual_edge_attrs_appearance
    • GraphVisualization.visual_edge_attrs_space
    • GraphVisualization.visual_node_attrs
    • GraphVisualization.simplify_graph()
    • GraphVisualization.pin_node_layout()
    • GraphVisualization.update_visual_attrs()
    • GraphVisualization.show_graph()
    • GraphVisualization.show_edge()
    • GraphVisualization.debug_edge_repr()
    • GraphVisualization.repr_edge_data()
    • GraphVisualization.show_error_case()
    • GraphVisualization.show()
  • on_pick()
  • color_nodes()
  • nx_ensure_agraph_color()
• graphid.core.refresh module
  • RefreshCriteria
    • RefreshCriteria.clear()
    • RefreshCriteria.check()
    • RefreshCriteria.prob_any_remain()
    • RefreshCriteria._prob_none_remain()
    • RefreshCriteria.pred_num_positives()
    • RefreshCriteria.add()
    • RefreshCriteria.ave()
    • RefreshCriteria.pos_frac
  • demo_refresh()
  • _dev_iters_until_threshold()
• graphid.core.state module
  • _Common
  • _ConstHelper
  • EVIDENCE_DECISION
    • EVIDENCE_DECISION.UNREVIEWED
    • EVIDENCE_DECISION.NEGATIVE
    • EVIDENCE_DECISION.POSITIVE
    • EVIDENCE_DECISION.INCOMPARABLE
    • EVIDENCE_DECISION.UNKNOWN
    • EVIDENCE_DECISION.INT_TO_CODE
    • EVIDENCE_DECISION.INT_TO_NICE
    • EVIDENCE_DECISION.CODE_TO_NICE
    • EVIDENCE_DECISION.CODE_TO_INT
    • EVIDENCE_DECISION.NICE_TO_CODE
    • EVIDENCE_DECISION.NICE_TO_INT
    • EVIDENCE_DECISION.MATCH_CODE
    • EVIDENCE_DECISION.CODE
      • EVIDENCE_DECISION.CODE.INCOMPARABLE
      • EVIDENCE_DECISION.CODE.NEGATIVE
      • EVIDENCE_DECISION.CODE.POSITIVE
      • EVIDENCE_DECISION.CODE.UNKNOWN
      • EVIDENCE_DECISION.CODE.UNREVIEWED
    • EVIDENCE_DECISION.NICE
      • EVIDENCE_DECISION.NICE.INCOMPARABLE
      • EVIDENCE_DECISION.NICE.NEGATIVE
      • EVIDENCE_DECISION.NICE.POSITIVE
      • EVIDENCE_DECISION.NICE.UNKNOWN
      • EVIDENCE_DECISION.NICE.UNREVIEWED
  • META_DECISION
    • META_DECISION.NULL
    • META_DECISION.DIFF
    • META_DECISION.SAME
    • META_DECISION.INT_TO_CODE
    • META_DECISION.INT_TO_NICE
    • META_DECISION.CODE_TO_NICE
    • META_DECISION.CODE_TO_INT
    • META_DECISION.NICE_TO_CODE
    • META_DECISION.NICE_TO_INT
    • META_DECISION.CODE
      • META_DECISION.CODE.DIFF
      • META_DECISION.CODE.NULL
      • META_DECISION.CODE.SAME
    • META_DECISION.NICE
      • META_DECISION.NICE.DIFF
      • META_DECISION.NICE.NULL
      • META_DECISION.NICE.SAME
  • CONFIDENCE
    • CONFIDENCE.UNKNOWN
    • CONFIDENCE.GUESSING
    • CONFIDENCE.NOT_SURE
    • CONFIDENCE.PRETTY_SURE
    • CONFIDENCE.ABSOLUTELY_SURE
    • CONFIDENCE.INT_TO_CODE
    • CONFIDENCE.INT_TO_NICE
    • CONFIDENCE.CODE_TO_NICE
    • CONFIDENCE.CODE_TO_INT
    • CONFIDENCE.NICE_TO_CODE
    • CONFIDENCE.NICE_TO_INT
    • CONFIDENCE.CODE
      • CONFIDENCE.CODE.ABSOLUTELY_SURE
      • CONFIDENCE.CODE.GUESSING
      • CONFIDENCE.CODE.NOT_SURE
      • CONFIDENCE.CODE.PRETTY_SURE
      • CONFIDENCE.CODE.UNKNOWN
    • CONFIDENCE.NICE
      • CONFIDENCE.NICE.ABSOLUTELY_SURE
      • CONFIDENCE.NICE.GUESSING
      • CONFIDENCE.NICE.NOT_SURE
      • CONFIDENCE.NICE.PRETTY_SURE
      • CONFIDENCE.NICE.UNKNOWN
  • QUAL
    • QUAL.EXCELLENT
    • QUAL.GOOD
    • QUAL.OK
    • QUAL.POOR
    • QUAL.JUNK
    • QUAL.UNKNOWN
    • QUAL.INT_TO_CODE
    • QUAL.INT_TO_NICE
    • QUAL.CODE_TO_NICE
    • QUAL.CODE_TO_INT
    • QUAL.NICE_TO_CODE
    • QUAL.NICE_TO_INT
    • QUAL.CODE
      • QUAL.CODE.EXCELLENT
      • QUAL.CODE.GOOD
      • QUAL.CODE.JUNK
      • QUAL.CODE.OK
      • QUAL.CODE.POOR
      • QUAL.CODE.UNKNOWN
    • QUAL.NICE
      • QUAL.NICE.EXCELLENT
      • QUAL.NICE.GOOD
      • QUAL.NICE.JUNK
      • QUAL.NICE.OK
      • QUAL.NICE.POOR
      • QUAL.NICE.UNKNOWN
  • VIEW
    • VIEW.UNKNOWN
    • VIEW.R
    • VIEW.FR
    • VIEW.F
    • VIEW.FL
    • VIEW.L
    • VIEW.BL
    • VIEW.B
    • VIEW.BR
    • VIEW.U
    • VIEW.UF
    • VIEW.UB
    • VIEW.UL
    • VIEW.UR
    • VIEW.UFL
    • VIEW.UFR
    • VIEW.UBL
    • VIEW.UBR
    • VIEW.D
    • VIEW.DF
    • VIEW.DB
    • VIEW.DL
    • VIEW.DR
    • VIEW.DFL
    • VIEW.DFR
    • VIEW.DBL
    • VIEW.DBR
    • VIEW.INT_TO_CODE
    • VIEW.INT_TO_NICE
    • VIEW.CODE_TO_NICE
    • VIEW.CODE_TO_INT
    • VIEW.NICE_TO_CODE
    • VIEW.NICE_TO_INT
    • VIEW.DIST
    • VIEW.CODE
      • VIEW.CODE.B
      • VIEW.CODE.BL
      • VIEW.CODE.BR
      • VIEW.CODE.D
      • VIEW.CODE.DB
      • VIEW.CODE.DBL
      • VIEW.CODE.DBR
      • VIEW.CODE.DF
      • VIEW.CODE.DFL
      • VIEW.CODE.DFR
      • VIEW.CODE.DL
      • VIEW.CODE.DR
      • VIEW.CODE.F
      • VIEW.CODE.FL
      • VIEW.CODE.FR
      • VIEW.CODE.L
      • VIEW.CODE.R
      • VIEW.CODE.U
      • VIEW.CODE.UB
      • VIEW.CODE.UBL
      • VIEW.CODE.UBR
      • VIEW.CODE.UF
      • VIEW.CODE.UFL
      • VIEW.CODE.UFR
      • VIEW.CODE.UL
      • VIEW.CODE.UNKNOWN
      • VIEW.CODE.UR
    • VIEW.NICE
      • VIEW.NICE.B
      • VIEW.NICE.BL
      • VIEW.NICE.BR
      • VIEW.NICE.D
      • VIEW.NICE.DB
      • VIEW.NICE.DBL
      • VIEW.NICE.DBR
      • VIEW.NICE.DF
      • VIEW.NICE.DFL
      • VIEW.NICE.DFR
      • VIEW.NICE.DL
      • VIEW.NICE.DR
      • VIEW.NICE.F
      • VIEW.NICE.FL
      • VIEW.NICE.FR
      • VIEW.NICE.L
      • VIEW.NICE.R
      • VIEW.NICE.U
      • VIEW.NICE.UB
      • VIEW.NICE.UBL
      • VIEW.NICE.UBR
      • VIEW.NICE.UF
      • VIEW.NICE.UFL
      • VIEW.NICE.UFR
      • VIEW.NICE.UL
      • VIEW.NICE.UNKNOWN
      • VIEW.NICE.UR
    • VIEW.d
    • VIEW.f1
    • VIEW.f2

Module contents

Regenerate Input Command mkinit ~/code/graphid/graphid/core