graphid
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graphid package
Subpackages
graphid.core package
Submodules
Module contents
graphid.demo package
Submodules
Module contents
graphid.util package
Submodules
Module contents
Submodules
graphid.api module
GraphID
Module contents
graphid
Index
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Index
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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P
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Q
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T
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V
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W
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Z
_
_255_to_01() (graphid.util.Color class method)
(graphid.util.mplutil.Color class method)
_add_node() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
_add_review_edge() (graphid.core.mixin_dynamic.DynamicUpdate method)
_add_review_edges_from() (graphid.core.mixin_dynamic.DynamicUpdate method)
_cat() (graphid.util.Boxes class method)
(graphid.util.util_boxes.Boxes class method)
_check_edge() (graphid.core.annot_inference.Feedback method)
_check_inconsistency() (graphid.core.mixin_dynamic.Recovery method)
_Common (class in graphid.core.state)
_ConstHelper (class in graphid.core.state)
_cut() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
_dark_background() (in module graphid.util.mplutil)
_del_plotdat() (in module graphid.util.mplutil)
_dev_iters_until_threshold() (in module graphid.core.refresh)
_dynamic_test_callback() (graphid.core.mixin_simulation.SimulationHelpers method)
_dz() (in module graphid.util.nx_utils)
_edges_between_dense() (in module graphid.util.nx_utils)
_edges_between_disjoint() (in module graphid.util.nx_utils)
_edges_between_sparse() (in module graphid.util.nx_utils)
_edges_inside_lower() (in module graphid.util.nx_utils)
_edges_inside_upper() (in module graphid.util.nx_utils)
_ensure_color01() (graphid.util.Color method)
(graphid.util.mplutil.Color method)
_ensure_divider() (in module graphid.util.mplutil)
_error_color (graphid.core.mixin_viz.GraphVisualization property)
_generate_reviews() (graphid.core.mixin_priority.Priority method)
_get_axis_xy_width_height() (in module graphid.util.mplutil)
_get_cmap() (graphid.core.mixin_viz.GraphVisualization method)
_get_current_decision() (graphid.core.mixin_dynamic.DynamicUpdate method)
_get_edges_where() (graphid.core.mixin_helpers.AttrAccess method)
_get_node_size() (in module graphid.util.util_graphviz)
_get_num_rc() (graphid.util.mplutil.PlotNums class method)
(graphid.util.PlotNums class method)
_get_plotdat() (in module graphid.util.mplutil)
_get_plotdat_dict() (in module graphid.util.mplutil)
_get_square_row_cols() (graphid.util.mplutil.PlotNums method)
(graphid.util.PlotNums method)
_get_truth() (graphid.demo.dummy_algos.DummyVerif method)
_get_truth_colors() (graphid.core.mixin_viz.GraphVisualization method)
_grabdata_with_mirrors() (in module graphid.util.util_grabdata)
_graph_cls (graphid.core.annot_inference.AltConstructors attribute)
_groupby_prelayout() (in module graphid.util.util_graphviz)
_heappush_max() (in module graphid.util.priority_queue)
_hex_to_01() (graphid.util.Color class method)
(graphid.util.mplutil.Color class method)
_increase_priority() (graphid.core.mixin_priority.Priority method)
_inner_priority_gen() (graphid.core.mixin_loops.InfrLoops method)
_is_base01() (graphid.util.Color class method)
(graphid.util.mplutil.Color class method)
_is_base255() (graphid.util.Color class method)
(graphid.util.mplutil.Color class method)
_lookup_colorspace_code() (in module graphid.util.util_image)
_make_review_tuple() (graphid.core.mixin_loops.InfrReviewers method)
_mincut_edge_weights() (graphid.core.mixin_dynamic.Recovery method)
_negative_decision() (graphid.core.mixin_dynamic.DynamicUpdate method)
_new_inconsistency() (graphid.core.mixin_dynamic.Recovery method)
_next_nid() (graphid.core.annot_inference.NameRelabel method)
_npstate_to_pystate() (in module graphid.util.util_random)
_peek_many() (graphid.core.mixin_priority.Priority method)
_pop() (graphid.core.mixin_priority.Priority method)
_positive_decision() (graphid.core.mixin_dynamic.DynamicUpdate method)
_print_debug_ccs() (graphid.core.annot_inference.Feedback method)
_print_previous_loop_statistics() (graphid.core.mixin_simulation.SimulationHelpers method)
_prob_none_remain() (graphid.core.refresh.RefreshCriteria method)
_purge_error_edges() (graphid.core.mixin_dynamic.Recovery method)
_purge_redun_flags() (graphid.core.mixin_redundancy.Redundancy method)
_push() (graphid.core.mixin_priority.Priority method)
_pystate_to_npstate() (in module graphid.util.util_random)
_rebuild() (graphid.util.priority_queue.PriorityQueue method)
(graphid.util.PriorityQueue method)
_rectified_relabel() (graphid.core.annot_inference.NameRelabel method)
_rectify_decision() (in module graphid.core.annot_inference)
_rectify_feedback() (graphid.core.annot_inference.Feedback method)
_rectify_feedback_item() (graphid.core.annot_inference.Feedback method)
_rectify_names() (graphid.core.annot_inference.NameRelabel method)
_rectify_nids() (graphid.core.annot_inference.MiscHelpers method)
_RedundancyAugmentation (class in graphid.core.mixin_redundancy)
_RedundancyComputers (class in graphid.core.mixin_redundancy)
_reinstate_edge_priority() (graphid.core.mixin_priority.Priority method)
_remove_edge_priority() (graphid.core.mixin_priority.Priority method)
_remove_node() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
_save_requested() (in module graphid.util.mplutil)
_set_error_edges() (graphid.core.mixin_dynamic.Recovery method)
_set_neg_redun_flags() (graphid.core.mixin_redundancy.Redundancy method)
_set_plotdat() (in module graphid.util.mplutil)
_set_pos_redun_flag() (graphid.core.mixin_redundancy.Redundancy method)
_string_to_01() (graphid.util.Color class method)
(graphid.util.mplutil.Color class method)
_uninferable_decision() (graphid.core.mixin_dynamic.DynamicUpdate method)
_union() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
_update_hashes() (in module graphid.util.util_grabdata)
_update_neg_metagraph() (graphid.core.mixin_dynamic.DynamicUpdate method)
A
ABSOLUTELY_SURE (graphid.core.state.CONFIDENCE attribute)
(graphid.core.state.CONFIDENCE.CODE attribute)
(graphid.core.state.CONFIDENCE.NICE attribute)
accept() (graphid.core.mixin_loops.InfrReviewers method)
add() (graphid.core.refresh.RefreshCriteria method)
add_aids() (graphid.core.annot_inference.MiscHelpers method)
add_annots_from() (graphid.api.GraphID method)
add_candidate_edges() (graphid.core.mixin_callbacks.InfrCandidates method)
add_edge() (graphid.api.GraphID method)
(graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
add_edges_from() (graphid.api.GraphID method)
(graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
add_element() (graphid.util.nx_dynamic_graph.nx_UnionFind method)
(graphid.util.nx_UnionFind method)
add_elements() (graphid.util.nx_dynamic_graph.nx_UnionFind method)
(graphid.util.nx_UnionFind method)
add_feedback() (graphid.api.GraphID method)
(graphid.core.annot_inference.Feedback method)
add_feedback_from() (graphid.core.annot_inference.Feedback method)
add_node() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
add_node_feedback() (graphid.core.annot_inference.Feedback method)
add_nodes_from() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
adjust_hsv() (graphid.util.Color method)
(graphid.util.mplutil.Color method)
adjust_subplots() (in module graphid.util)
(in module graphid.util.mplutil)
alias_tags() (in module graphid.util)
(in module graphid.util.util_tags)
all_dict_combinations() (in module graphid.util)
(in module graphid.util.util_misc)
all_feedback() (graphid.core.annot_inference.Feedback method)
all_feedback_items() (graphid.core.annot_inference.Feedback method)
AltConstructors (class in graphid.core.annot_inference)
AnnotInference (class in graphid.core.annot_inference)
apply_feedback_edges() (graphid.core.annot_inference.Feedback method)
apply_graph_layout_attrs() (in module graphid.util)
(in module graphid.util.util_graphviz)
apply_grouping() (in module graphid.util)
(in module graphid.util.util_numpy)
apply_nondynamic_update() (graphid.core.mixin_dynamic.NonDynamicUpdate method)
are_nodes_connected() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
area (graphid.util.Boxes property)
(graphid.util.util_boxes.Boxes property)
as01() (graphid.util.Color method)
(graphid.util.mplutil.Color method)
as255() (graphid.util.Color method)
(graphid.util.mplutil.Color method)
ashex() (graphid.util.Color method)
(graphid.util.mplutil.Color method)
aslist() (in module graphid.util)
(in module graphid.util.util_misc)
assert_consistency_invariant() (graphid.core.mixin_invariants.AssertInvariants method)
assert_disjoint_invariant() (graphid.core.mixin_invariants.AssertInvariants method)
assert_edge() (graphid.core.mixin_invariants.AssertInvariants method)
assert_invariants() (graphid.core.mixin_invariants.AssertInvariants method)
assert_neg_metagraph() (graphid.core.mixin_invariants.AssertInvariants method)
assert_raises() (in module graphid.util)
(in module graphid.util.nx_utils)
assert_recovery_invariant() (graphid.core.mixin_invariants.AssertInvariants method)
assert_union_invariant() (graphid.core.mixin_invariants.AssertInvariants method)
AssertInvariants (class in graphid.core.mixin_invariants)
atleast_nd() (in module graphid.util)
(in module graphid.util.util_numpy)
AttrAccess (class in graphid.core.mixin_helpers)
ave() (graphid.core.refresh.RefreshCriteria method)
ax_absolute_text() (in module graphid.util.mpl_plottool)
axes_extent() (in module graphid.util)
(in module graphid.util.mplutil)
B
B (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
bbox_from_extent() (in module graphid.util)
(in module graphid.util.util_graphviz)
bfs_conditional() (in module graphid.util)
(in module graphid.util.nx_utils)
BL (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
box_ious_py() (in module graphid.util)
(in module graphid.util.util_boxes)
Boxes (class in graphid.util)
(class in graphid.util.util_boxes)
BR (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
build_alias_map() (in module graphid.util)
(in module graphid.util.util_tags)
C
cartoon_stacked_rects() (in module graphid.util.mpl_plottool)
categorize_edges() (graphid.core.mixin_dynamic.NonDynamicUpdate method)
center (graphid.util.Boxes property)
(graphid.util.util_boxes.Boxes property)
check() (graphid.core.refresh.RefreshCriteria method)
classproperty (class in graphid.util)
(class in graphid.util.util_misc)
clear() (graphid.core.refresh.RefreshCriteria method)
(graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
(graphid.util.nx_dynamic_graph.nx_UnionFind method)
(graphid.util.nx_UnionFind method)
(graphid.util.priority_queue.PriorityQueue method)
(graphid.util.PriorityQueue method)
clear_edges() (graphid.core.annot_inference.Feedback method)
clear_feedback() (graphid.core.annot_inference.Feedback method)
clear_name_labels() (graphid.core.annot_inference.Feedback method)
clip() (graphid.util.Boxes method)
(graphid.util.util_boxes.Boxes method)
CODE_TO_INT (graphid.core.state.CONFIDENCE attribute)
(graphid.core.state.EVIDENCE_DECISION attribute)
(graphid.core.state.META_DECISION attribute)
(graphid.core.state.QUAL attribute)
(graphid.core.state.VIEW attribute)
CODE_TO_NICE (graphid.core.state.CONFIDENCE attribute)
(graphid.core.state.EVIDENCE_DECISION attribute)
(graphid.core.state.META_DECISION attribute)
(graphid.core.state.QUAL attribute)
(graphid.core.state.VIEW attribute)
collapsed_meta_edges() (graphid.core.mixin_dynamic.NonDynamicUpdate method)
Color (class in graphid.util)
(class in graphid.util.mplutil)
color_nodes() (in module graphid.core.mixin_viz)
colorbar() (in module graphid.util)
(in module graphid.util.mplutil)
complement_edges() (in module graphid.util)
(in module graphid.util.nx_utils)
component() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
component_labels() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
component_nodes() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
components (graphid.util.Boxes property)
(graphid.util.util_boxes.Boxes property)
compress() (graphid.util.Boxes method)
(graphid.util.util_boxes.Boxes method)
CONFIDENCE (class in graphid.core.state)
CONFIDENCE.CODE (class in graphid.core.state)
CONFIDENCE.NICE (class in graphid.core.state)
confidently_connected() (graphid.core.mixin_priority.Priority method)
confidently_separated() (graphid.core.mixin_priority.Priority method)
connected_components() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
connected_to() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
Consistency (class in graphid.core.annot_inference)
consistent_components() (graphid.core.annot_inference.Consistency method)
continue_review() (graphid.core.mixin_loops.InfrReviewers method)
Convenience (class in graphid.core.mixin_helpers)
convert() (graphid.util.Color method)
(graphid.util.mplutil.Color method)
convert_colorspace() (in module graphid.util)
(in module graphid.util.util_image)
copy() (graphid.core.annot_inference.AnnotInference method)
(graphid.util.Boxes method)
(graphid.util.util_boxes.Boxes method)
cprint() (in module graphid.util)
(in module graphid.util.util_misc)
D
D (graphid.core.state.VIEW attribute)
d (graphid.core.state.VIEW attribute)
D (graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
DB (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
DBL (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
DBR (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
debug_edge_repr() (graphid.core.mixin_viz.GraphVisualization method)
delete_dict_keys() (in module graphid.util)
(in module graphid.util.util_misc)
delete_items() (graphid.util.priority_queue.PriorityQueue method)
(graphid.util.PriorityQueue method)
delete_items_by_index() (in module graphid.util)
(in module graphid.util.util_misc)
demo_refresh() (in module graphid.core.refresh)
demodata_bridge() (in module graphid.util)
(in module graphid.util.nx_utils)
demodata_infr() (in module graphid.demo.dummy_infr)
demodata_oldnames() (in module graphid.util)
(in module graphid.util.name_rectifier)
demodata_tarjan_bridge() (in module graphid.util)
(in module graphid.util.nx_utils)
deterministic_shuffle() (in module graphid.util)
(in module graphid.util.mplutil)
DF (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
DFL (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
DFR (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
diag_product() (in module graphid.util)
(in module graphid.util.nx_utils)
dict_intersection() (in module graphid.util)
(in module graphid.util.mplutil)
dict_take_column() (in module graphid.util)
(in module graphid.util.nx_utils)
DIFF (graphid.core.state.META_DECISION attribute)
(graphid.core.state.META_DECISION.CODE attribute)
(graphid.core.state.META_DECISION.NICE attribute)
DIST (graphid.core.state.VIEW attribute)
distinct() (graphid.util.Color class method)
(graphid.util.mplutil.Color class method)
distinct_colors() (in module graphid.util)
(in module graphid.util.mplutil)
distinct_markers() (in module graphid.util)
(in module graphid.util.mplutil)
DL (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
DR (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
draw_border() (in module graphid.util)
(in module graphid.util.mplutil)
draw_boxes() (in module graphid.util)
(in module graphid.util.mplutil)
draw_line_segments() (in module graphid.util)
(in module graphid.util.mplutil)
draw_network2() (in module graphid.util)
(in module graphid.util.util_graphviz)
DummyEdges (class in graphid.core.mixin_helpers)
DummyRanker (class in graphid.demo.dummy_algos)
DummyVerif (class in graphid.demo.dummy_algos)
dump_logs() (graphid.core.annot_inference.MiscHelpers method)
dump_nx_ondisk() (in module graphid.util)
(in module graphid.util.util_graphviz)
DynamicUpdate (class in graphid.core.mixin_dynamic)
DynConnGraph (class in graphid.util)
(class in graphid.util.nx_dynamic_graph)
E
E (graphid.util.GRAPHVIZ_KEYS attribute)
(graphid.util.util_graphviz.GRAPHVIZ_KEYS attribute)
e_() (graphid.core.mixin_helpers.Convenience static method)
(in module graphid.util)
(in module graphid.util.nx_utils)
edge_decision() (graphid.core.annot_inference.Feedback method)
edge_decision_from() (graphid.core.annot_inference.Feedback method)
edge_df() (in module graphid.util)
(in module graphid.util.nx_utils)
edge_tag_hist() (graphid.core.mixin_helpers.Convenience method)
edges() (graphid.core.mixin_helpers.AttrAccess method)
(graphid.util.GraphHelperMixin method)
(graphid.util.nx_dynamic_graph.GraphHelperMixin method)
edges_between() (in module graphid.util)
(in module graphid.util.nx_utils)
edges_cross() (in module graphid.util)
(in module graphid.util.nx_utils)
edges_inside() (in module graphid.util)
(in module graphid.util.nx_utils)
edges_outgoing() (in module graphid.util)
(in module graphid.util.nx_utils)
emit_manual_review() (graphid.core.mixin_loops.InfrReviewers method)
ensure_cliques() (graphid.core.mixin_helpers.DummyEdges method)
ensure_edges_from() (graphid.core.mixin_dynamic.DynamicUpdate method)
ensure_float01() (in module graphid.util)
(in module graphid.util.util_image)
ensure_fnum() (in module graphid.util)
(in module graphid.util.mplutil)
ensure_full() (graphid.core.mixin_helpers.DummyEdges method)
ensure_iterable() (in module graphid.util)
(in module graphid.util.util_misc)
ensure_mst() (graphid.core.mixin_helpers.DummyEdges method)
ensure_multi_index() (in module graphid.util)
(in module graphid.util.nx_utils)
ensure_nonhex_color() (in module graphid.util)
(in module graphid.util.util_graphviz)
ensure_priority_scores() (graphid.core.mixin_callbacks.InfrCandidates method)
ensure_rng() (in module graphid.util)
(in module graphid.util.util_random)
ensure_task_probs() (graphid.core.mixin_callbacks.InfrCandidates method)
estarmap() (in module graphid.util)
(in module graphid.util.util_misc)
EVIDENCE_DECISION (class in graphid.core.state)
EVIDENCE_DECISION.CODE (class in graphid.core.state)
EVIDENCE_DECISION.NICE (class in graphid.core.state)
EXCELLENT (graphid.core.state.QUAL attribute)
(graphid.core.state.QUAL.CODE attribute)
(graphid.core.state.QUAL.NICE attribute)
extract_axes_extents() (in module graphid.util)
(in module graphid.util.mplutil)
F
F (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
f1 (graphid.core.state.VIEW attribute)
f2 (graphid.core.state.VIEW attribute)
Feedback (class in graphid.core.annot_inference)
feedback_data_keys (graphid.core.annot_inference.Feedback attribute)
feedback_keys (graphid.core.annot_inference.Feedback attribute)
figure() (in module graphid.util)
(in module graphid.util.mplutil)
filter_edges_flagged_as_redun() (graphid.core.mixin_redundancy.Redundancy method)
filterflags_general_tags() (in module graphid.util)
(in module graphid.util.util_tags)
find_clique_edges() (graphid.core.mixin_helpers.DummyEdges method)
find_connecting_edges() (graphid.core.mixin_helpers.DummyEdges method)
find_consistent_labeling() (in module graphid.util)
(in module graphid.util.name_rectifier)
find_mst_edges() (graphid.core.mixin_helpers.DummyEdges method)
find_neg_augment_edges() (graphid.core.mixin_redundancy._RedundancyAugmentation method)
find_neg_nid_freq_to() (graphid.core.mixin_redundancy._RedundancyComputers method)
find_neg_nids_to() (graphid.core.mixin_redundancy._RedundancyComputers method)
find_neg_redun_candidate_edges() (graphid.core.mixin_redundancy._RedundancyAugmentation method)
find_neg_redun_nids() (graphid.core.mixin_redundancy._RedundancyComputers method)
find_neg_redun_nids_to() (graphid.core.mixin_redundancy._RedundancyComputers method)
find_non_neg_redun_pccs() (graphid.core.mixin_redundancy._RedundancyComputers method)
find_non_pos_redundant_pccs() (graphid.core.mixin_redundancy._RedundancyComputers method)
find_pos_augment_edges() (graphid.core.mixin_redundancy._RedundancyAugmentation method)
find_pos_redun_candidate_edges() (graphid.core.mixin_redundancy._RedundancyAugmentation method)
find_pos_redun_nids() (graphid.core.mixin_redundancy._RedundancyComputers method)
find_pos_redundant_pccs() (graphid.core.mixin_redundancy._RedundancyComputers method)
FL (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
flag_None_items() (in module graphid.util)
(in module graphid.util.util_misc)
FR (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
from_netx() (graphid.core.annot_inference.AltConstructors class method)
from_pairs() (graphid.core.annot_inference.AltConstructors class method)
G
G (graphid.util.GRAPHVIZ_KEYS attribute)
(graphid.util.util_graphviz.GRAPHVIZ_KEYS attribute)
gen_edge_attrs() (graphid.core.mixin_helpers.AttrAccess method)
gen_edge_values() (graphid.core.mixin_helpers.AttrAccess method)
gen_node_attrs() (graphid.core.mixin_helpers.AttrAccess method)
gen_node_values() (graphid.core.mixin_helpers.AttrAccess method)
generate_reviews() (graphid.core.mixin_priority.Priority method)
get() (graphid.util.priority_queue.PriorityQueue method)
(graphid.util.PriorityQueue method)
get_annot_attrs() (graphid.core.mixin_helpers.AttrAccess method)
get_axis_xy_width_height() (in module graphid.util)
(in module graphid.util.mpl_plottool)
(in module graphid.util.mplutil)
get_colored_edge_weights() (graphid.core.mixin_viz.GraphVisualization method)
get_colored_weights() (graphid.core.mixin_viz.GraphVisualization method)
get_edge_attr() (graphid.core.mixin_helpers.AttrAccess method)
get_edge_attrs() (graphid.core.mixin_helpers.AttrAccess method)
get_edge_data() (graphid.core.mixin_helpers.AttrAccess method)
get_edge_dataframe() (graphid.core.mixin_helpers.AttrAccess method)
get_edge_df_text() (graphid.core.mixin_helpers.AttrAccess method)
get_edges_where_eq() (graphid.core.mixin_helpers.AttrAccess method)
get_edges_where_ne() (graphid.core.mixin_helpers.AttrAccess method)
get_explicit_graph() (in module graphid.util)
(in module graphid.util.util_graphviz)
get_graph_bounding_box() (in module graphid.util)
(in module graphid.util.util_graphviz)
get_node_attrs() (graphid.core.mixin_helpers.AttrAccess method)
get_nonvisual_edge_data() (graphid.core.mixin_helpers.AttrAccess method)
get_num_channels() (in module graphid.util)
(in module graphid.util.util_image)
get_nx_layout() (in module graphid.util)
(in module graphid.util.util_graphviz)
get_plotdat_dict() (in module graphid.util.mpl_plottool)
get_pointset_extents() (in module graphid.util)
(in module graphid.util.util_graphviz)
get_timestamp() (in module graphid.util)
(in module graphid.util.util_misc)
GOOD (graphid.core.state.QUAL attribute)
(graphid.core.state.QUAL.CODE attribute)
(graphid.core.state.QUAL.NICE attribute)
grab_test_image_fpath() (in module graphid.util.util_grabdata)
grab_test_imgpath() (in module graphid.util)
(in module graphid.util.util_grabdata)
graph_info() (in module graphid.util)
(in module graphid.util.nx_utils)
GraphHelperMixin (class in graphid.util)
(class in graphid.util.nx_dynamic_graph)
graphid
module
GraphID (class in graphid.api)
graphid.__init__
module
graphid.api
module
graphid.core
module
graphid.core.__main__
module
graphid.core._rhomb_dist
module
graphid.core.annot_inference
module
graphid.core.mixin_callbacks
module
graphid.core.mixin_dynamic
module
graphid.core.mixin_helpers
module
graphid.core.mixin_invariants
module
graphid.core.mixin_loops
module
graphid.core.mixin_priority
module
graphid.core.mixin_redundancy
module
graphid.core.mixin_simulation
module
graphid.core.mixin_viz
module
graphid.core.refresh
module
graphid.core.state
module
graphid.demo
module
graphid.demo.__main__
module
graphid.demo.demo_script
module
graphid.demo.dummy_algos
module
graphid.demo.dummy_infr
module
graphid.util
module
graphid.util.mpl_plottool
module
graphid.util.mplutil
module
graphid.util.name_rectifier
module
graphid.util.nx_dynamic_graph
module
graphid.util.nx_utils
module
graphid.util.priority_queue
module
graphid.util.util_boxes
module
graphid.util.util_grabdata
module
graphid.util.util_graphviz
module
graphid.util.util_group
module
graphid.util.util_image
module
graphid.util.util_kw
module
graphid.util.util_misc
module
graphid.util.util_numpy
module
graphid.util.util_random
module
graphid.util.util_tags
module
GraphVisualization (class in graphid.core.mixin_viz)
GRAPHVIZ_KEYS (class in graphid.util)
(class in graphid.util.util_graphviz)
group_indices() (in module graphid.util)
(in module graphid.util.util_numpy)
group_items() (in module graphid.util)
(in module graphid.util.util_numpy)
group_name_edges() (in module graphid.util)
(in module graphid.util.nx_utils)
group_pairs() (in module graphid.util)
(in module graphid.util.util_group)
grouping_delta() (in module graphid.util)
(in module graphid.util.util_group)
GUESSING (graphid.core.state.CONFIDENCE attribute)
(graphid.core.state.CONFIDENCE.CODE attribute)
(graphid.core.state.CONFIDENCE.NICE attribute)
H
hardcase_review_gen() (graphid.core.mixin_loops.InfrLoops method)
has_edge() (graphid.core.mixin_helpers.AttrAccess method)
has_edges() (graphid.util.GraphHelperMixin method)
(graphid.util.nx_dynamic_graph.GraphHelperMixin method)
has_nodes() (graphid.util.GraphHelperMixin method)
(graphid.util.nx_dynamic_graph.GraphHelperMixin method)
highlight_regex() (in module graphid.util)
(in module graphid.util.util_misc)
hypothesis_errors() (graphid.core.mixin_dynamic.Recovery method)
I
imread() (in module graphid.util)
(in module graphid.util.util_image)
imshow() (in module graphid.util)
(in module graphid.util.mplutil)
imwrite() (in module graphid.util)
(in module graphid.util.util_image)
incomp_graph (graphid.core.mixin_helpers.Convenience property)
INCOMPARABLE (graphid.core.state.EVIDENCE_DECISION attribute)
(graphid.core.state.EVIDENCE_DECISION.CODE attribute)
(graphid.core.state.EVIDENCE_DECISION.NICE attribute)
incon_recovery_gen() (graphid.core.mixin_loops.InfrLoops method)
inconsistent_components() (graphid.core.annot_inference.Consistency method)
InfrCallbacks (class in graphid.core.mixin_callbacks)
InfrCandidates (class in graphid.core.mixin_callbacks)
InfrLoops (class in graphid.core.mixin_loops)
InfrReviewers (class in graphid.core.mixin_loops)
init_refresh() (graphid.core.mixin_loops.InfrLoops method)
init_simulation() (graphid.core.mixin_simulation.SimulationHelpers method)
init_test_mode() (graphid.core.mixin_simulation.SimulationHelpers method)
initialize_graph() (graphid.core.annot_inference.MiscHelpers method)
initialize_visual_node_attrs() (graphid.core.mixin_viz.GraphVisualization method)
INT_TO_CODE (graphid.core.state.CONFIDENCE attribute)
(graphid.core.state.EVIDENCE_DECISION attribute)
(graphid.core.state.META_DECISION attribute)
(graphid.core.state.QUAL attribute)
(graphid.core.state.VIEW attribute)
INT_TO_NICE (graphid.core.state.CONFIDENCE attribute)
(graphid.core.state.EVIDENCE_DECISION attribute)
(graphid.core.state.META_DECISION attribute)
(graphid.core.state.QUAL attribute)
(graphid.core.state.VIEW attribute)
is_complete() (in module graphid.util)
(in module graphid.util.nx_utils)
is_consistent() (graphid.api.GraphID method)
(graphid.core.annot_inference.Consistency method)
is_flagged_as_redun() (graphid.core.mixin_redundancy.Redundancy method)
is_k_edge_connected() (in module graphid.util)
(in module graphid.util.nx_utils)
is_neg_redundant() (graphid.core.mixin_redundancy._RedundancyComputers method)
is_pos_redundant() (graphid.core.mixin_redundancy._RedundancyComputers method)
is_recovering() (graphid.core.mixin_dynamic.Recovery method)
isect() (in module graphid.util)
(in module graphid.util.util_misc)
isect_flags() (in module graphid.util)
(in module graphid.util.util_numpy)
itake_column() (in module graphid.util)
(in module graphid.util.nx_utils)
iter_reduce_ufunc() (in module graphid.util)
(in module graphid.util.util_numpy)
iteritems_sorted() (in module graphid.util)
(in module graphid.util.util_misc)
J
JUNK (graphid.core.state.QUAL attribute)
(graphid.core.state.QUAL.CODE attribute)
(graphid.core.state.QUAL.NICE attribute)
K
k_edge_augmentation() (in module graphid.util)
(in module graphid.util.nx_utils)
KWSpec (class in graphid.util)
(class in graphid.util.util_kw)
L
L (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
latest_logs() (graphid.core.annot_inference.MiscHelpers method)
legend() (in module graphid.util)
(in module graphid.util.mplutil)
list_roll() (in module graphid.util)
(in module graphid.util.nx_utils)
M
main() (in module graphid.demo.__main__)
main_gen() (graphid.core.mixin_loops.InfrLoops method)
main_loop() (graphid.core.mixin_loops.InfrLoops method)
make_agraph() (in module graphid.util)
(in module graphid.util.util_graphviz)
make_bbox() (in module graphid.util.mpl_plottool)
make_heatmask() (in module graphid.util)
(in module graphid.util.mplutil)
make_index_lookup() (in module graphid.util)
(in module graphid.util.util_misc)
MATCH_CODE (graphid.core.state.EVIDENCE_DECISION attribute)
match_state_df() (graphid.core.mixin_helpers.Convenience method)
maybe_error_edges() (graphid.core.mixin_dynamic.Recovery method)
measure_error_edges() (graphid.core.mixin_simulation.SimulationHelpers method)
measure_metrics() (graphid.core.mixin_simulation.SimulationHelpers method)
META_DECISION (class in graphid.core.state)
META_DECISION.CODE (class in graphid.core.state)
META_DECISION.NICE (class in graphid.core.state)
MiscHelpers (class in graphid.core.annot_inference)
module
graphid
graphid.__init__
graphid.api
graphid.core
graphid.core.__main__
graphid.core._rhomb_dist
graphid.core.annot_inference
graphid.core.mixin_callbacks
graphid.core.mixin_dynamic
graphid.core.mixin_helpers
graphid.core.mixin_invariants
graphid.core.mixin_loops
graphid.core.mixin_priority
graphid.core.mixin_redundancy
graphid.core.mixin_simulation
graphid.core.mixin_viz
graphid.core.refresh
graphid.core.state
graphid.demo
graphid.demo.__main__
graphid.demo.demo_script
graphid.demo.dummy_algos
graphid.demo.dummy_infr
graphid.util
graphid.util.mpl_plottool
graphid.util.mplutil
graphid.util.name_rectifier
graphid.util.nx_dynamic_graph
graphid.util.nx_utils
graphid.util.priority_queue
graphid.util.util_boxes
graphid.util.util_grabdata
graphid.util.util_graphviz
graphid.util.util_group
graphid.util.util_image
graphid.util.util_kw
graphid.util.util_misc
graphid.util.util_numpy
graphid.util.util_random
graphid.util.util_tags
multi_plot() (in module graphid.util)
(in module graphid.util.mplutil)
N
N (graphid.util.GRAPHVIZ_KEYS attribute)
(graphid.util.util_graphviz.GRAPHVIZ_KEYS attribute)
named_colors() (graphid.util.Color class method)
(graphid.util.mplutil.Color class method)
NameRelabel (class in graphid.core.annot_inference)
neg_graph (graphid.core.mixin_helpers.Convenience property)
neg_redun_gen() (graphid.core.mixin_loops.InfrLoops method)
NEGATIVE (graphid.core.state.EVIDENCE_DECISION attribute)
(graphid.core.state.EVIDENCE_DECISION.CODE attribute)
(graphid.core.state.EVIDENCE_DECISION.NICE attribute)
netx_draw_images_at_positions() (in module graphid.util)
(in module graphid.util.util_graphviz)
next_fnum() (in module graphid.util)
(in module graphid.util.mplutil)
NICE_TO_CODE (graphid.core.state.CONFIDENCE attribute)
(graphid.core.state.EVIDENCE_DECISION attribute)
(graphid.core.state.META_DECISION attribute)
(graphid.core.state.QUAL attribute)
(graphid.core.state.VIEW attribute)
NICE_TO_INT (graphid.core.state.CONFIDENCE attribute)
(graphid.core.state.EVIDENCE_DECISION attribute)
(graphid.core.state.META_DECISION attribute)
(graphid.core.state.QUAL attribute)
(graphid.core.state.VIEW attribute)
NiceGraph (class in graphid.util)
(class in graphid.util.nx_dynamic_graph)
node_label() (graphid.core.annot_inference.NameRelabel method)
(graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
node_labels() (graphid.core.annot_inference.NameRelabel method)
(graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
node_tag_hist() (graphid.core.mixin_helpers.Convenience method)
NonDynamicUpdate (class in graphid.core.mixin_dynamic)
NOT_SURE (graphid.core.state.CONFIDENCE attribute)
(graphid.core.state.CONFIDENCE.CODE attribute)
(graphid.core.state.CONFIDENCE.NICE attribute)
NULL (graphid.core.state.META_DECISION attribute)
(graphid.core.state.META_DECISION.CODE attribute)
(graphid.core.state.META_DECISION.NICE attribute)
number_of_components() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
nx_agraph_layout() (in module graphid.util)
(in module graphid.util.util_graphviz)
nx_delete_edge_attr() (in module graphid.util)
(in module graphid.util.nx_utils)
nx_delete_node_attr() (in module graphid.util)
(in module graphid.util.nx_utils)
nx_delete_None_edge_attr() (in module graphid.util)
(in module graphid.util.nx_utils)
nx_delete_None_node_attr() (in module graphid.util)
(in module graphid.util.nx_utils)
nx_edges() (in module graphid.util)
(in module graphid.util.nx_utils)
nx_ensure_agraph_color() (in module graphid.core.mixin_viz)
(in module graphid.util)
(in module graphid.util.util_graphviz)
nx_gen_edge_attrs() (in module graphid.util)
(in module graphid.util.nx_utils)
nx_gen_edge_values() (in module graphid.util)
(in module graphid.util.nx_utils)
nx_gen_node_attrs() (in module graphid.util)
(in module graphid.util.nx_utils)
nx_gen_node_values() (in module graphid.util)
(in module graphid.util.nx_utils)
nx_node_dict() (in module graphid.util)
(in module graphid.util.nx_utils)
nx_sink_nodes() (in module graphid.util.nx_utils)
nx_source_nodes() (in module graphid.util.nx_utils)
nx_UnionFind (class in graphid.util)
(class in graphid.util.nx_dynamic_graph)
O
OK (graphid.core.state.QUAL attribute)
(graphid.core.state.QUAL.CODE attribute)
(graphid.core.state.QUAL.NICE attribute)
on_between() (graphid.core.mixin_dynamic.DynamicUpdate method)
on_pick() (in module graphid.core.mixin_viz)
on_within() (graphid.core.mixin_dynamic.DynamicUpdate method)
order_dict_by() (in module graphid.util)
(in module graphid.util.util_group)
P
pair_connection_info() (graphid.core.mixin_helpers.Convenience method)
pan_factory() (in module graphid.util)
(in module graphid.util.mplutil)
pan_on_motion() (graphid.util.mplutil.PanEvents method)
(graphid.util.PanEvents method)
pan_on_press() (graphid.util.mplutil.PanEvents method)
(graphid.util.PanEvents method)
pan_on_release() (graphid.util.mplutil.PanEvents method)
(graphid.util.PanEvents method)
pandas_plot_matrix() (in module graphid.util)
(in module graphid.util.mplutil)
PanEvents (class in graphid.util)
(class in graphid.util.mplutil)
parse_aedge_layout_attrs() (in module graphid.util)
(in module graphid.util.util_graphviz)
parse_anode_layout_attrs() (in module graphid.util)
(in module graphid.util.util_graphviz)
parse_fontkw() (in module graphid.util.mpl_plottool)
parse_html_graphviz_attrs() (in module graphid.util)
(in module graphid.util.util_graphviz)
parse_point() (in module graphid.util)
(in module graphid.util.util_graphviz)
partial_order() (in module graphid.util)
(in module graphid.util.util_misc)
patch_pygraphviz() (in module graphid.util)
(in module graphid.util.util_graphviz)
pccs() (graphid.api.GraphID method)
peek() (graphid.api.GraphID method)
(graphid.core.mixin_priority.Priority method)
(graphid.util.priority_queue.PriorityQueue method)
(graphid.util.PriorityQueue method)
peek_many() (graphid.core.mixin_priority.Priority method)
(graphid.util.priority_queue.PriorityQueue method)
(graphid.util.PriorityQueue method)
pin_node_layout() (graphid.core.mixin_viz.GraphVisualization method)
PlotNums (class in graphid.util)
(class in graphid.util.mplutil)
POOR (graphid.core.state.QUAL attribute)
(graphid.core.state.QUAL.CODE attribute)
(graphid.core.state.QUAL.NICE attribute)
pop() (graphid.core.mixin_priority.Priority method)
(graphid.util.priority_queue.PriorityQueue method)
(graphid.util.PriorityQueue method)
pop_many() (graphid.util.priority_queue.PriorityQueue method)
(graphid.util.PriorityQueue method)
pos_frac (graphid.core.refresh.RefreshCriteria property)
pos_graph (graphid.core.mixin_helpers.Convenience property)
pos_redun_gen() (graphid.core.mixin_loops.InfrLoops method)
POSITIVE (graphid.core.state.EVIDENCE_DECISION attribute)
(graphid.core.state.EVIDENCE_DECISION.CODE attribute)
(graphid.core.state.EVIDENCE_DECISION.NICE attribute)
positive_components() (graphid.core.annot_inference.Consistency method)
pred_num_positives() (graphid.core.refresh.RefreshCriteria method)
predict_candidate_edges() (graphid.demo.dummy_algos.DummyRanker method)
predict_edges() (graphid.demo.dummy_algos.DummyVerif method)
predict_proba_df() (graphid.demo.dummy_algos.DummyVerif method)
predict_rankings() (graphid.demo.dummy_algos.DummyRanker method)
predict_single_ranking() (graphid.demo.dummy_algos.DummyRanker method)
PRETTY_SURE (graphid.core.state.CONFIDENCE attribute)
(graphid.core.state.CONFIDENCE.CODE attribute)
(graphid.core.state.CONFIDENCE.NICE attribute)
print() (graphid.core.annot_inference.MiscHelpers method)
print_graph_connections() (graphid.core.mixin_helpers.Convenience method)
print_graph_info() (graphid.core.mixin_helpers.Convenience method)
print_within_connection_info() (graphid.core.mixin_helpers.Convenience method)
prioritize() (graphid.core.mixin_priority.Priority method)
Priority (class in graphid.core.mixin_priority)
PriorityQueue (class in graphid.util)
(class in graphid.util.priority_queue)
prob_any_remain() (graphid.core.refresh.RefreshCriteria method)
push() (graphid.core.mixin_priority.Priority method)
Q
qtensure() (in module graphid.util)
(in module graphid.util.mplutil)
QUAL (class in graphid.core.state)
QUAL.CODE (class in graphid.core.state)
QUAL.NICE (class in graphid.core.state)
R
R (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
randn() (in module graphid.util)
(in module graphid.util.util_misc)
random() (graphid.util.Boxes class method)
(graphid.util.util_boxes.Boxes class method)
random_combinations() (in module graphid.util)
(in module graphid.util.util_random)
random_k_edge_connected_graph() (in module graphid.util)
(in module graphid.util.nx_utils)
random_product() (in module graphid.util)
(in module graphid.util.util_random)
ranked_list_gen() (graphid.core.mixin_loops.InfrLoops method)
rebalance() (graphid.util.nx_dynamic_graph.nx_UnionFind method)
(graphid.util.nx_UnionFind method)
Recovery (class in graphid.core.mixin_dynamic)
Redundancy (class in graphid.core.mixin_redundancy)
refresh_candidate_edges() (graphid.core.mixin_callbacks.InfrCallbacks method)
RefreshCriteria (class in graphid.core.refresh)
regex_word() (in module graphid.util)
(in module graphid.util.util_misc)
reinstate_internal_priority() (graphid.core.mixin_priority.Priority method)
relabel_using_reviews() (graphid.core.annot_inference.NameRelabel method)
relative_text() (in module graphid.util)
(in module graphid.util.mplutil)
remaining_reviews() (graphid.core.mixin_priority.Priority method)
remove_aids() (graphid.core.annot_inference.MiscHelpers method)
remove_edge() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
remove_edges_from() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
remove_entire_cc() (graphid.util.nx_dynamic_graph.nx_UnionFind method)
(graphid.util.nx_UnionFind method)
remove_internal_priority() (graphid.core.mixin_priority.Priority method)
remove_node() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
remove_nodes_from() (graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
replace_nones() (in module graphid.util)
(in module graphid.util.util_misc)
repr_edge_data() (graphid.core.mixin_viz.GraphVisualization method)
request_oracle_review() (graphid.core.mixin_loops.InfrReviewers method)
reset() (graphid.core.annot_inference.Feedback method)
reset_name_labels() (graphid.core.annot_inference.Feedback method)
reverse_colormap() (in module graphid.util)
(in module graphid.util.mplutil)
review() (graphid.core.mixin_simulation.UserOracle method)
RhombicuboctahedronDistanceDemo() (in module graphid.core._rhomb_dist)
run_demo() (in module graphid.demo.demo_script)
S
safe_argmax() (in module graphid.util)
(in module graphid.util.util_misc)
safe_extreme() (in module graphid.util)
(in module graphid.util.util_misc)
safe_max() (in module graphid.util)
(in module graphid.util.util_misc)
safe_min() (in module graphid.util)
(in module graphid.util.util_misc)
SAME (graphid.core.state.META_DECISION attribute)
(graphid.core.state.META_DECISION.CODE attribute)
(graphid.core.state.META_DECISION.NICE attribute)
save_parts() (in module graphid.util)
(in module graphid.util.mplutil)
scale() (graphid.util.Boxes method)
(graphid.util.util_boxes.Boxes method)
scores_to_cmap() (in module graphid.util)
(in module graphid.util.mplutil)
scores_to_color() (in module graphid.util)
(in module graphid.util.mplutil)
set_config() (graphid.core.annot_inference.AnnotInference method)
set_edge_attr() (graphid.core.mixin_helpers.AttrAccess method)
set_edge_attrs() (graphid.core.mixin_helpers.AttrAccess method)
set_figtitle() (in module graphid.util)
(in module graphid.util.mplutil)
set_node_attrs() (graphid.core.mixin_helpers.AttrAccess method)
set_plotdat() (in module graphid.util.mpl_plottool)
set_ranker() (graphid.core.mixin_callbacks.InfrCallbacks method)
set_verifier() (graphid.core.mixin_callbacks.InfrCallbacks method)
setdiff() (in module graphid.util)
(in module graphid.util.util_misc)
shape (graphid.util.Boxes property)
(graphid.util.util_boxes.Boxes property)
shift() (graphid.util.Boxes method)
(graphid.util.util_boxes.Boxes method)
show() (graphid.core.mixin_viz.GraphVisualization method)
show_edge() (graphid.core.mixin_viz.GraphVisualization method)
show_error_case() (graphid.core.mixin_viz.GraphVisualization method)
show_graph() (graphid.core.mixin_viz.GraphVisualization method)
show_if_requested() (in module graphid.util)
(in module graphid.util.mplutil)
show_nx() (in module graphid.util)
(in module graphid.util.util_graphviz)
show_score_probs() (graphid.demo.dummy_algos.DummyVerif method)
shuffle() (in module graphid.util)
(in module graphid.util.util_random)
simple_munkres() (in module graphid.util)
(in module graphid.util.name_rectifier)
simplify_graph() (graphid.core.mixin_viz.GraphVisualization method)
SimulationHelpers (class in graphid.core.mixin_simulation)
skip() (graphid.core.mixin_loops.InfrReviewers method)
snapped_slice() (in module graphid.util)
(in module graphid.util.util_misc)
sort_dict() (in module graphid.util)
(in module graphid.util.util_group)
sortedby() (in module graphid.util)
(in module graphid.util.util_group)
stack_graphs() (in module graphid.util)
(in module graphid.util.util_graphviz)
start_id_review() (graphid.core.mixin_loops.InfrLoops method)
stats_dict() (in module graphid.util)
(in module graphid.util.util_misc)
status() (graphid.core.annot_inference.AltConstructors method)
subgraph() (graphid.api.GraphID method)
(graphid.core.annot_inference.AnnotInference method)
(graphid.util.DynConnGraph method)
(graphid.util.nx_dynamic_graph.DynConnGraph method)
subparams() (graphid.core.annot_inference.AnnotInference method)
T
tag_hist() (in module graphid.util)
(in module graphid.util.util_tags)
take_column() (in module graphid.util)
(in module graphid.util.nx_utils)
take_percentile_parts() (in module graphid.util)
(in module graphid.util.util_misc)
to_cxywh() (graphid.util.Boxes method)
(graphid.util.util_boxes.Boxes method)
to_extent() (graphid.util.Boxes method)
(graphid.util.util_boxes.Boxes method)
to_sets() (graphid.util.nx_dynamic_graph.nx_UnionFind method)
(graphid.util.nx_UnionFind method)
to_tlbr() (graphid.util.Boxes method)
(graphid.util.util_boxes.Boxes method)
to_xywh() (graphid.util.Boxes method)
(graphid.util.util_boxes.Boxes method)
toformat() (graphid.util.Boxes method)
(graphid.util.util_boxes.Boxes method)
translate_graph() (in module graphid.util)
(in module graphid.util.util_graphviz)
translate_graph_to_origin() (in module graphid.util)
(in module graphid.util.util_graphviz)
transpose() (graphid.util.Boxes method)
(graphid.util.util_boxes.Boxes method)
try_auto_review() (graphid.core.mixin_loops.InfrReviewers method)
U
U (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
UB (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
UBL (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
UBR (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
UF (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
UFL (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
UFR (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
UL (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
union() (graphid.util.nx_dynamic_graph.nx_UnionFind method)
(graphid.util.nx_UnionFind method)
UNKNOWN (graphid.core.state.CONFIDENCE attribute)
(graphid.core.state.CONFIDENCE.CODE attribute)
(graphid.core.state.CONFIDENCE.NICE attribute)
(graphid.core.state.EVIDENCE_DECISION attribute)
(graphid.core.state.EVIDENCE_DECISION.CODE attribute)
(graphid.core.state.EVIDENCE_DECISION.NICE attribute)
(graphid.core.state.QUAL attribute)
(graphid.core.state.QUAL.CODE attribute)
(graphid.core.state.QUAL.NICE attribute)
(graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
unknown_graph (graphid.core.mixin_helpers.Convenience property)
UNREVIEWED (graphid.core.state.EVIDENCE_DECISION attribute)
(graphid.core.state.EVIDENCE_DECISION.CODE attribute)
(graphid.core.state.EVIDENCE_DECISION.NICE attribute)
unreviewed_graph (graphid.core.mixin_helpers.Convenience property)
update() (graphid.util.priority_queue.PriorityQueue method)
(graphid.util.PriorityQueue method)
update_extern_neg_redun() (graphid.core.mixin_redundancy.Redundancy method)
update_neg_redun_to() (graphid.core.mixin_redundancy.Redundancy method)
update_node_attributes() (graphid.core.annot_inference.MiscHelpers method)
update_node_image_attribute() (graphid.core.mixin_viz.GraphVisualization method)
update_node_image_config() (graphid.core.mixin_viz.GraphVisualization method)
update_pos_redun() (graphid.core.mixin_redundancy.Redundancy method)
update_visual_attrs() (graphid.core.mixin_viz.GraphVisualization method)
UR (graphid.core.state.VIEW attribute)
(graphid.core.state.VIEW.CODE attribute)
(graphid.core.state.VIEW.NICE attribute)
UserOracle (class in graphid.core.mixin_simulation)
V
VIEW (class in graphid.core.state)
VIEW.CODE (class in graphid.core.state)
VIEW.NICE (class in graphid.core.state)
visual_edge_attrs (graphid.core.mixin_viz.GraphVisualization property)
visual_edge_attrs_appearance (graphid.core.mixin_viz.GraphVisualization property)
visual_edge_attrs_space (graphid.core.mixin_viz.GraphVisualization property)
visual_node_attrs (graphid.core.mixin_viz.GraphVisualization property)
W
where() (in module graphid.util)
(in module graphid.util.util_misc)
Z
zoom_factory() (in module graphid.util)
(in module graphid.util.mplutil)
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